GWS CRIPSRa analysis

!lamin login testuser2

import lamindb as ln

ln.context.uid = "T0T28btuB0PG0000"
ln.context.track()

Access the UI-uploaded artifact

input_file = ln.Artifact.get(key="schmidt22-crispra-gws-IFNG.csv")

Identify hits

input_df = input_file.load().set_index("id")
output_df = input_df[input_df["pos|fdr"] < 0.01].copy()

Register hits in output artifact

ln.Artifact.from_df(output_df, description="hits from schmidt22 crispra GWS").save()

# ln.context.finish()